[EMBOSS] install EMBOSS-3.0.0 on Intel Mac

[ajb at ebi.ac.uk]

> Thank you very much for your advice.
>
> On 2006/06/05, at 0:12, ajb at ebi.ac.uk wrote:
>> Dear Haruo,
>>
>>> ajindex.c: In function 'ajBtreeCacheNewC':
>>> ajindex.c:200: error: storage size of 'buf' isn't known
>>> ajindex.c: In function 'ajBtreeSecCacheNewC':
>>> ajindex.c:8234: error: storage size of 'buf' isn't known
>>> make[1]: *** [ajindex.lo] Error 1
>>> make: *** [all-recursive] Error 1
>>
>> That error shows that something went wrong when you tried to apply
>> the fixes from the ftp server. You are trying to compile the
>> original ajindex.c file. I'd suggest that you compare the file sizes
>> on your local system with those in the fixes directory and reapply
>> any fixes as appropriate.
>>
>> HTH
>>
>> Alan
>
> Although I made sure if I replaced the old files with new files
> in the fixes directory and redo the 'make', I failed.
>
> % make
>
> *snip*
>
> /bin/sh ../libtool --tag=CC --mode=link gcc  -O1   -o aaindexextract
> aaindexextract.o ../nucleus/libnucleus.la ../ajax/libajaxg.la ../ajax/
> libajax.la ../plplot/libplplot.la -L/usr/X11R6/lib -lX11  -lm  -lgd -
> lpng -lz -lm
> mkdir .libs
> libtool: link: warning: library `/usr/local/lib/libgd.la' was moved.
> libtool: link: warning: library `/usr/local/lib/libgd.la' was moved.
> libtool: link: cannot find the library `/opt/local/lib/libjpeg.la'
> make[2]: *** [aaindexextract] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all-recursive] Error 1
>
> On 2006/06/04, at 17:58, Koen van der Drift wrote:
>>
>> On Jun 4, 2006, at 8:23 PM, haruosuz at yahoo.co.jp wrote:
>>
>>> dpkg: error processing /sw/fink/dists/unstable/main/binary-darwin-
>>> i386/graphics/libjpeg_6b-16_darwin-i386.deb (--install):
>>> package architecture (darwin-i386) does not match system (darwin-
>>> powerpc)
>>> dpkg: error processing /sw/fink/dists/unstable/main/binary-darwin-
>>> i386/graphics/libjpeg-bin_6b-16_darwin-i386.deb (--install):
>>> package architecture (darwin-i386) does not match system (darwin-
>>> powerpc)
>>> Errors were encountered while processing:
>>> /sw/fink/dists/unstable/main/binary-darwin-i386/graphics/
>>> libjpeg_6b-16_darwin-i386.deb
>>> /sw/fink/dists/unstable/main/binary-darwin-i386/graphics/libjpeg-
>>> bin_6b-16_darwin-i386.deb
>>> ### execution of dpkg failed, exit code 1
>>> Failed: can't batch-install packages: /sw/fink/dists/unstable/main/
>>> binary-darwin-i386/graphics/libjpeg_6b-16_darwin-i386.deb /sw/fink/
>>> dists/unstable/main/binary-darwin-i386/graphics/libjpeg-
>>> bin_6b-16_darwin-i386.deb
>>
>>
>> Haruo,
>>
>> That's an error for the libjpeg package in fink. I suggest you
>> contact the libjpeg package maintainer (%fink info libjpeg).
>>
>> good luck,
>>
>> - Koen.
>
>
> Begin forwarded message:
>
>> Actually, the problem is not with the libjpeg package in fink.  The
>> problem is that you are somehow mixing the intel and powerpc
>> versions of fink.  My guess is that you installed fink by using the
>> Fink-0.8.0-Installer?  Unfortunately, that only works correctly on
>> powerpc.  To install fink on intel, you must bootstrap it from
>> scratch, as mentioned on the fink homepage.  If you have trouble
>> with this, please consult the mailing list fink-
>> users at lists.sourceforge.net
>
>
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