[EMBOSS] install EMBOSS-3.0.0 on Intel Mac

[haruosuz at yahoo.co.jp]

Thank you very much for your advice.

On 2006/06/05, at 0:12, ajb at ebi.ac.uk wrote:
> Dear Haruo,
>
>> ajindex.c: In function 'ajBtreeCacheNewC':
>> ajindex.c:200: error: storage size of 'buf' isn't known
>> ajindex.c: In function 'ajBtreeSecCacheNewC':
>> ajindex.c:8234: error: storage size of 'buf' isn't known
>> make[1]: *** [ajindex.lo] Error 1
>> make: *** [all-recursive] Error 1
>
> That error shows that something went wrong when you tried to apply
> the fixes from the ftp server. You are trying to compile the
> original ajindex.c file. I'd suggest that you compare the file sizes
> on your local system with those in the fixes directory and reapply
> any fixes as appropriate.
>
> HTH
>
> Alan

Although I made sure if I replaced the old files with new files
in the fixes directory and redo the 'make', I failed.

% make

*snip*

/bin/sh ../libtool --tag=CC --mode=link gcc  -O1   -o aaindexextract   
aaindexextract.o ../nucleus/libnucleus.la ../ajax/libajaxg.la ../ajax/ 
libajax.la ../plplot/libplplot.la -L/usr/X11R6/lib -lX11  -lm  -lgd - 
lpng -lz -lm
mkdir .libs
libtool: link: warning: library `/usr/local/lib/libgd.la' was moved.
libtool: link: warning: library `/usr/local/lib/libgd.la' was moved.
libtool: link: cannot find the library `/opt/local/lib/libjpeg.la'
make[2]: *** [aaindexextract] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all-recursive] Error 1

On 2006/06/04, at 17:58, Koen van der Drift wrote:
>
> On Jun 4, 2006, at 8:23 PM, haruosuz at yahoo.co.jp wrote:
>
>> dpkg: error processing /sw/fink/dists/unstable/main/binary-darwin-
>> i386/graphics/libjpeg_6b-16_darwin-i386.deb (--install):
>> package architecture (darwin-i386) does not match system (darwin-
>> powerpc)
>> dpkg: error processing /sw/fink/dists/unstable/main/binary-darwin-
>> i386/graphics/libjpeg-bin_6b-16_darwin-i386.deb (--install):
>> package architecture (darwin-i386) does not match system (darwin-
>> powerpc)
>> Errors were encountered while processing:
>> /sw/fink/dists/unstable/main/binary-darwin-i386/graphics/
>> libjpeg_6b-16_darwin-i386.deb
>> /sw/fink/dists/unstable/main/binary-darwin-i386/graphics/libjpeg-
>> bin_6b-16_darwin-i386.deb
>> ### execution of dpkg failed, exit code 1
>> Failed: can't batch-install packages: /sw/fink/dists/unstable/main/
>> binary-darwin-i386/graphics/libjpeg_6b-16_darwin-i386.deb /sw/fink/
>> dists/unstable/main/binary-darwin-i386/graphics/libjpeg-
>> bin_6b-16_darwin-i386.deb
>
>
> Haruo,
>
> That's an error for the libjpeg package in fink. I suggest you  
> contact the libjpeg package maintainer (%fink info libjpeg).
>
> good luck,
>
> - Koen.


Begin forwarded message:

> Actually, the problem is not with the libjpeg package in fink.  The  
> problem is that you are somehow mixing the intel and powerpc  
> versions of fink.  My guess is that you installed fink by using the  
> Fink-0.8.0-Installer?  Unfortunately, that only works correctly on  
> powerpc.  To install fink on intel, you must bootstrap it from  
> scratch, as mentioned on the fink homepage.  If you have trouble  
> with this, please consult the mailing list fink- 
> users at lists.sourceforge.net


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