[EMBOSS] compiling embassy programs

[Fernan Aguero]

+----[ Deborah Weisman <dvorah at agri.huji.ac.il> (25.Jul.2006 12:53):
|
| Starting with Phylip, since the docs claim that Phylip also should
| install without problems:
| Since emboss is installed into /usr/local , I did:
| 
|  ./configure --prefix=/usr/local --enable-localforce
| 
| and then make gives:
| 
| clique.c: In function `emboss_getoptions':
| clique.c:160: error: void value not ignored as it ought to be
| make: *** [all-recursive] Error 1
| 
| I downloaded the current version of phylip, without emboss additions,
| from :
| ftp://evolution.genetics.washington.edu/pub/phylip/phylip-3.65.tar.gz
| and it compiles and runs with no problems.
| 
| Do you have any suggestions as to what I should be looking at?
|
+----]

Deborah,

I've had the same problem building the old phylip against
emboss-4.0.0, however the one that's called PHYLIPNEW (3.6b)
compiles fine.

I've compiled all embassy apps without problem against
emboss 4.0.0 on FreeBSD-6.1. Following is the list of
embassy apps with the versions I've used. If in doubt
re-download the distfile, as sometimes they are re-rolled
with a new version of emboss without changing their version
... below is the MD5 checksum and size of the files that are
working for me.

Cheers,

fernan

MD5 (emboss/DOMAINATRIX-0.1.0.tar.gz) = 5893d3e5f101783050cbbc44766fe7d8
SIZE (emboss/DOMAINATRIX-0.1.0.tar.gz) = 405474
MD5 (emboss/EMNU-1.05.tar.gz) = 3ef6e2ac28f55b167b7f2f3614015618
SIZE (emboss/EMNU-1.05.tar.gz) = 377734
MD5 (emboss/ESIM4-1.0.0.tar.gz) = 35b0f661043bd9c03aaba22f7bffc321
SIZE (emboss/ESIM4-1.0.0.tar.gz) = 417724
MD5 (emboss/HMMER-2.3.2.tar.gz) = 967454c708ecaa0cbd47deda66b78e65
SIZE (emboss/HMMER-2.3.2.tar.gz) = 546870
MD5 (emboss/MEMENEW-0.1.0.tar.gz) = 46b6ca9eeba6c63bd08ebe1b661434dc
SIZE (emboss/MEMENEW-0.1.0.tar.gz) = 423254
MD5 (emboss/MSE-1.0.0.tar.gz) = b5f3f4ed1e74c6cf7a7d57d398a7634b
SIZE (emboss/MSE-1.0.0.tar.gz) = 428940
MD5 (emboss/PHYLIPNEW-3.6b.tar.gz) = 3a12ee43c48562092f4f2add0e8f2978
SIZE (emboss/PHYLIPNEW-3.6b.tar.gz) = 1532866
MD5 (emboss/TOPO-1.0.0.tar.gz) = 538c5205fc65ff3b0f3b83dde466200f
SIZE (emboss/TOPO-1.0.0.tar.gz) = 367882
MD5 (emboss/DOMALIGN-0.1.0.tar.gz) = 38ab9e0a0158cf923668d0e863606b54
SIZE (emboss/DOMALIGN-0.1.0.tar.gz) = 440714
MD5 (emboss/DOMSEARCH-0.1.0.tar.gz) = d214f124dd2806aa2eb163682dc7be7f
SIZE (emboss/DOMSEARCH-0.1.0.tar.gz) = 452839
MD5 (emboss/SIGNATURE-0.1.0.tar.gz) = 64eae2537e7c887f5af2275ac3f1d2fa
SIZE (emboss/SIGNATURE-0.1.0.tar.gz) = 549405
MD5 (emboss/STRUCTURE-0.1.0.tar.gz) = 93e7bb7fbd53d8aa2e1ab0d1af4f44c4
SIZE (emboss/STRUCTURE-0.1.0.tar.gz) = 514336
MD5 (emboss/MYEMBOSS-3.0.0.tar.gz) = 7536331836127104c3dac6941118cbac
SIZE (emboss/MYEMBOSS-3.0.0.tar.gz) = 343762
MD5 (emboss/VIENNA-1.6.tar.gz) = 66087ecae4775e9c9928980f7976deee
SIZE (emboss/VIENNA-1.6.tar.gz) = 590827