[EMBOSS] Web Interfaces to Emboss Tools - Checked by AntiVir DEMO v
Guy Bottu
gbottu at ben.vub.ac.be
Fri Jul 14 08:32:24 UTC 2006
Dear Andy,
Well, you might consider using wEMBOSS, developed by the Belgian and
Argentinian EMBnet Nodes (http://wemboss.sourceforge.net/). It works with
data stored on the server. The data are in a classic UNIX directory,
so that you can easily let software run on these data in a terminal
session or use ftp for bulk data transfers, in case you might want to do
that. wEMBOSS has facilities to upload/download data and manage them in
different "projects".
On the same site you will also find wrappers4EMBOSS, that allows to
integrate under the EMBOSS/wEMBOSS interface a number of programs that
are very useful but lacking in EMBOSS (BLAST, fastA, MUSCLE, a program to
search the complete PROSITE rather than just the patterns, ...).
As for the recovery of data from SeqWeb, I have no experience with that.
The related problem of how to use data generated by GCG under EMBOSS is
simpler : EMBOSS does accept GCG sequence and GCG MSF files, as well as
GCG codon usage tables. wEMBOSS does include a facility to convert GCG
List Files into EMBOSS List Files.
Sincerely,
Guy Bottu,
Belgian EMBnet Node
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