[EMBOSS] (no subject)

Simon Andrews simon.andrews at bbsrc.ac.uk
Thu Aug 31 10:48:56 UTC 2006

On 29 Aug 2006, at 12:37, Shrish Tiwari wrote:

> Hi!
> Is there a program in EMBOSS to extract the coordinates of exons?

It depends what you mean.

If you want to extract the transcript sequence from a genomic  
sequence with an mRNA feature defined in its header then you can use  

If you want to figure out where the exon positions are in a sequence  
and you have an mRNA and a genomic sequence then you can use est2genome.

If you just want to view the header annotation then entret will give  
you that.


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