[EMBOSS] Antwort: (no subject)

[David.Bauer at schering.de]

Hi,

you can use 'showfeat' with the option '-pos' to display sequence features
with the positions.

If your exons are annotated as 'mRNA' in the feature table you could use:
showfeat -pos -matchtype mRNA <your_sequence_file>
To get only the positions without the ascii graphics use '-width 0'

HTH,
David.

emboss-bounces at lists.open-bio.org schrieb am 29/08/2006 13:37:46:

> Hi!
>
> Is there a program in EMBOSS to extract the coordinates of exons?
>
> Shrish
>
>
> ______________________________________________________________________
> Dr. Shrish Tiwari, Scientist
> BIC, Centre for Cellular and Molecular Biology
> Uppal Road, Hyderabad - 500 007
> Phone: 91-40-7192776 (work), 91-40-7156603 (home)
> email: shrish at ccmb.res.in
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