[EMBOSS] Problems indexing with dbxfasta

[simon andrews (BI)]

I managed to get hold of a debug file from the failing dbxfasta.  The
edited highlights are:

Debug file dbxfasta.dbg buffered:No
ajFileNewIn '/usr/local/share/EMBOSS/acd/dbxfasta.acd'
EOF ajFileGetsL file /usr/local/share/EMBOSS/acd/dbxfasta.acd
closing file '/usr/local/share/EMBOSS/acd/dbxfasta.acd'
ajUserGet buffer len: 0 res: 2048 ptr: 8d8eb18
ajUserGet buffer len: 0 res: 2048 ptr: 8d8eb18
ajUserGet buffer len: 5 res: 2048 ptr: 8d8f320
ajUserGet buffer len: 1 res: 2048 ptr: 8d8fb28
ajUserGet buffer len: 5 res: 2048 ptr: 8d8eb18
ajUserGet buffer len: 3 res: 2048 ptr: 8d8eb18
ajUserGet buffer len: 8 res: 2048 ptr: 8d8eb18
ajFileScan directory: './'
  nisc-platypus-shotgun-1071756042.fasta
  nisc-platypus-shotgun-1080815515.fasta
  nisc-platypus-shotgun-1102160893.fasta


[snip big list of files]

closing file './/traces_oanatinus.ent'
ajFileNewIn './nisc-platypus-shotgun-1048960391.fasta'
EOF ajFileGetsL file ./nisc-platypus-shotgun-1048960391.fasta
closing file './nisc-platypus-shotgun-1048960391.fasta'
ajFileNewIn './nisc-platypus-shotgun-1071756042.fasta'
EOF ajFileGetsL file ./nisc-platypus-shotgun-1071756042.fasta
closing file './nisc-platypus-shotgun-1071756042.fasta'
ajFileNewIn './nisc-platypus-shotgun-1080815515.fasta'
EOF ajFileGetsL file ./nisc-platypus-shotgun-1080815515.fasta
closing file './nisc-platypus-shotgun-1080815515.fasta'
ajFileNewIn './nisc-platypus-shotgun-1102160893.fasta'
EOF ajFileGetsL file ./nisc-platypus-shotgun-1102160893.fasta
closing file './nisc-platypus-shotgun-1102160893.fasta'
ajFileNewIn './nisc-platypus-shotgun-1104879084.fasta'
EOF ajFileGetsL file ./nisc-platypus-shotgun-1104879084.fasta
closing file './nisc-platypus-shotgun-1104879084.fasta'
ajFileNewIn './nisc-platypus-shotgun-1109000445.fasta'
EOF ajFileGetsL file ./nisc-platypus-shotgun-1109000445.fasta
closing file './nisc-platypus-shotgun-1109000445.fasta'
ajFileNewIn './nisc-platypus-shotgun-1110804272.fasta'
EOF ajFileGetsL file ./nisc-platypus-shotgun-1110804272.fasta
closing file './nisc-platypus-shotgun-1110804272.fasta'
ajFileNewIn './nisc-platypus-shotgun-1116844699.fasta'
EOF ajFileGetsL file ./nisc-platypus-shotgun-1116844699.fasta
closing file './nisc-platypus-shotgun-1116844699.fasta'
ajFileNewIn './nisc-platypus-shotgun-1142973027.fasta'
EOF ajFileGetsL file ./nisc-platypus-shotgun-1142973027.fasta
closing file './nisc-platypus-shotgun-1142973027.fasta'
ajFileNewIn './wugsc-ornithorhynchus_anatinus-cloneEnd-1113828608.fasta'
WriteBucket: Overflow
WriteBucket: Overflow
ReadBucket: Overflow
ReadBucket: Overflow
ReadBucket: Overflow
ReadBucket: Overflow
WriteBucket: Overflow

[Loads more of these]

GetKeys: Overflow
ReadBucket: Overflow
GetKeys: Overflow
WriteNode: Overflow
GetKeys: Overflow
WriteNode: Overflow
WriteBucket: Overflow
WriteBucket: Overflow

[Loads of these]

WriteNode: Overflow
GetKeys: Overflow
WriteNode: Overflow
GetKeys: Overflow
GetKeys: Overflow
WriteNode: Overflow
GetKeys: Overflow
GetKeys: Overflow
WriteNode: Overflow
GetKeys: Overflow
WriteNode: Overflow
GetKeys: Overflow

[Killed at this point as the .dbg file getting enormous]