[EMBOSS] Problems indexing with dbxfasta

Marc Logghe Marc.Logghe at DEVGEN.com
Thu Apr 13 09:00:56 UTC 2006


Hi Simon,
> The same files have indexed OK with formatdb.  I havent' 
> tried with dbifasta as I'm trying to move everything over to 
> the new dbx system (and the rest of our databases have 
> processed OK with dbx(fasta|flat)).
> 
> Anyone have any ideas about how to debug this?
You can run the command with the -debug option (any EMBOSS application
accepts this option). In that case a dbxfasta.dbg file will be created.
Hope this file will give you the clues.
Cheers,
Marc




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