[EMBOSS] Cusp cfile option

[Jon Ison]

Dear Marc

"-cfile" isn't a valid option for cusp (at least, in my
installation) Perhaps you were referring to a different
program ?

cusp reads a codon usage data file* as a template but
doesn't use any of the data - so any file from any species
will give the same results.

Cheers

Jon


(*from your current working directory ('.'), "embossdata"
subdirectory in '.', your home directory (~) or "embossdata"
subdirectory in '~'.



> Hi all,
> I was wondering what the purpose was for the -cfile option in cusp.
> After all, cusp *creates* a cut file, so why should it need one ?
> Also, where can I find out about the species for the CODONS/*.cut files.
> I looked inside these for a comment or something, but nothing was there.
> For instance, Eyeast.cut is obvious, but what species is used for
> Eyen.cut ?
> Just curious.
> Thanks,
> Marc
>
>
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