[EMBOSS] embossrc - configure database NPRD and AEdb

[Jon Ison]

Dear Giovanni

The EMBOSS Administrators Guide
(http://emboss.sourceforge.net/docs/adminguide/)

should help, specificially the section on databases:
http://emboss.sourceforge.net/docs/adminguide/node4.html#SECTION00420000000000000000

If it doesn't feel free to get back in touch.

Cheers

Jon


> Hi all,
> I'm trying to configure this two databases in my .embossrc -
> emboss_default
> , but I didn't managed to get it works:
>
> http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-page+LibInfo+-id+3Xn_71Qks76+-lib+NUCLEOSOME
> http://www.ebi.ac.uk/asd-srv/AEdb-query.cgi?method=MAIN&visit=first
>
> For the first one, I've tried this:
>
> DB NPRD [
> method: srswww
> format: embl
> # url: "
> http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-id+1YUkq1Qk6fN+-e+[NUCLEOSOME:'%s']
> "
> # url: "
> http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-page+LibInfo+-id+3Xn_71QkMvb+-lib+NUCLEOSOME
> "
> # url: "
> http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-id+-e+[NUCLEOSOME:'%s']"
> url: "http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz"
> type: N
> dbalias: NUCLEOSOME
> app: getz
> fields: "AC SQ"
> ]
>
> But what's is wrong? How can I understand what is the 'correct' url to
> choose, and how can I determine the right 'method' and 'format'?
> I've seen that in the main page of this database, there are description
> about the syntax and the and the structure in SRS. For example, can I use
> the informations described here:
> http://srs6.bionet.nsc.ru/srs6bin/cgi-bin/wgetz?-page+icarusFile+-id+3Xn_71Qks76+-l+NUCLEOSOME+-ifile+i?
>
> Thank you for any reply.
> Giovanni
>
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