[EMBOSS] Segmentation fault when doing seqret

[David.Bauer at SCHERING.DE]

Hi,

you can try the new indexing system dbxflat.
This indexer has no 2 Gb limit.

David.
emboss-bounces at emboss.open-bio.org schrieb am 13/10/2005 10:46:48:

> Hi,
> Are any of the EMBL flat files larger than 2GB? This is a problem when
> indexing with dbiflat and was already discussed on this list.
> Isabelle
>
> -----Original Message-----
> From: emboss-bounces at emboss.open-bio.org
> [mailto:emboss-bounces at emboss.open-bio.org] On Behalf Of Enrique de
> Andres Saiz
> Sent: Thursday, October 13, 2005 10:38
> To: emboss at emboss.open-bio.org
> Subject: [EMBOSS] Segmentation fault when doing seqret
>
>
> Hello,
>
> I'm trying to retrieve a sequence from embl using seqret command but I
> obtain a segmentation fault error:
>
> $> seqret embl:AC005155
> Reads and writes (returns) sequences
> Segmentation fault
>
> This doesn't happen with every entry in the database. With another
> entries, everything goes well.
>
> I'm using emboss-3.0.0 and EMBL database is indexed using dbiflat.
>
> Does anybody konws what could happen?
>
> Thanks in advance,
>
> Enrique.
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