[EMBOSS] Jemboss launch killing cpu

Michael Leong leongmz at gmail.com
Sat May 21 07:41:19 UTC 2005


I'm trying to setup Jemboss on my lan and trying to use the java webstart 
to launch it.  However, on the Jemboss login window, when the progress 
meter reaches about 50%, it locks up and eats all teh cpu.


Here are the steps at I took to install it:

untar EMBOSSS 2.10.0
untar tomcat 5.5.9
download emboss install script for tomcat 5.5.x
untar axis 1.2
mkdir /opt/emboss-data/soap
chmod 777 /opt/emboss-data/soap
chmod a+t /opt/emboss-data/soap

replace install script w/ one for tomcat 5.5.x
run ./install-jemboss-server.sh

install options:
os: linux
ssl: yes
port: 8443
java: jdk v1.5
unix auth: yes
tomcat uid: 1000
auth method: shadow
embassy pkgs: no
clustalw: /usr/bin
primer3_core: <blank>
auto deploy: yes
modifed server.xml as told
got warning about javax.activation.DataHandler and 
javax.mail.internet.MimeMultipart not found

    chown root /opt/emboss/bin/jembossctl
    chmod u+s /opt/emboss/bin/jembossctl

cd /opt/emboss/share/EMBOSS/jemboss/utils

edit /opt/emboss/share/EMBOSS/jemboss/jnlp/index.html and Jemboss.jnlp to 
proper webserver

copy /opt/emboss/share/EMBOSS/jemboss/jnlp/* to webserver

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