[EMBOSS] seqret again

[Peter Rice]

Derek Gatherer wrote:

> Is this a bug?  Compare the following output from seqret when phylip and 
> phylip3 are specified.  Shouldn't the first line of the phylip3 output 
> be "2 546 YF" and not "1 546" ?
> [gath01d at gamma EBV]$ seqret -osformat phylip3 seqs/balf1.both
> Reads and writes (returns) sequences
> Output sequence [c-balf1.phylip3]: seqs/balf1.phylip3
> [gath01d at gamma EBV]$ more seqs/balf1.phylip3
> 1 546 YF
> c-balf1.seATGCAGCCAG CCAAGTCTAC CGATTCGGTG TTTGTGAGGA CCCCGGTCGA
>           GGCGTGGGTC TCACCCTCGC CCCCGGACGA CAAAGTGGCA GAGACCAGCT
>           ACCTCCTGTT CAGGGCCCTA TACGCTGTGT TCACCCAGGA CGAGACGGAC
>           CTGCCTCTAC CGGCCCTGGT CATGTGCCGG CTCCTGAAGG CCTCCCTGAG

Yes. Fixed in the next release (and in the current CVS code).

Fixed as in "2 546" without the YF.

Do any programs require the YF?

Peter