[EMBOSS] seqret again
Derek Gatherer
d.gatherer at vir.gla.ac.uk
Wed Jun 15 13:25:36 UTC 2005
Is this a bug? Compare the following output from seqret when phylip and
phylip3 are specified. Shouldn't the first line of the phylip3 output be
"2 546 YF" and not "1 546" ?
[gath01d at gamma EBV]$ seqret -osformat phylip seqs/balf1.both
Reads and writes (returns) sequences
Output sequence [c-balf1.phylip]: seqs/balf1.phylip
[gath01d at gamma EBV]$ more seqs/balf1.phylip
2 546
c-balf1.seATGCAGCCAG CCAAGTCTAC CGATTCGGTG TTTGTGAGGA CCCCGGTCGA
balf1.seq ATGAGGCCAG CCAAGTCTAC AGATTCTGTG TTTGTGAGGA CCCCGGTCGA
GGCGTGGGTC TCACCCTCGC CCCCGGACGA CAAAGTGGCA GAGACCAGCT
GGCGTGGGTC GCGCCCTCGC CGCCGGACGA CAAGGTGGCT GAGTCCAGCT
[snip]
[gath01d at gamma EBV]$ seqret -osformat phylip3 seqs/balf1.both
Reads and writes (returns) sequences
Output sequence [c-balf1.phylip3]: seqs/balf1.phylip3
[gath01d at gamma EBV]$ more seqs/balf1.phylip3
1 546 YF
c-balf1.seATGCAGCCAG CCAAGTCTAC CGATTCGGTG TTTGTGAGGA CCCCGGTCGA
GGCGTGGGTC TCACCCTCGC CCCCGGACGA CAAAGTGGCA GAGACCAGCT
ACCTCCTGTT CAGGGCCCTA TACGCTGTGT TCACCCAGGA CGAGACGGAC
CTGCCTCTAC CGGCCCTGGT CATGTGCCGG CTCCTGAAGG CCTCCCTGAG
[snip]
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