[EMBOSS] URL dbs

[David Martin]

On 8/11/04 2:43 pm, "Stefan Rensing"
<stefan.rensing at biologie.uni-freiburg.de> wrote:

> Hi there,
> 
> can somebody please advice me which current public servers I might use
> to configure URL-based emboss sequence databases?
> 
> I'm mainly interested in Genbank nr and Uniprot. A syntax example would
> be gratefully acknowledged.
> 
> Cheers, Stefan
> 
> 
Apologies for the wrapping:

DB gp [ type: P method: url format: genbank
   url: 
"http://www.ncbi.nih.gov/entrez/query.fcgi?cmd=Text&uid=%s&db=Protein&do
pt=genpept"
   comment: "GenPept by IDs (gi)" ]

DB genbank [ type: N method: url format: genbank
   url: 
"http://www.ncbi.nih.gov/entrez/query.fcgi?cmd=Text&db=Nucleotide&uid=%s
&dopt=GenBank"
   comment: "Genbank by IDs (gi)" ]
DB srs_embl [ type: N
        format: embl
        method: url
        url: 
"http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[embl-AllText:%s]"
        comment: "text search against EMBL using EBI SRS server"
]