[EMBOSS] esim4 man page

Stefanie Lager stefanielager at fastmail.ca
Thu Mar 18 06:08:45 UTC 2004


ESIM4 doesn't seem to be able to align multiple mRNA sequences to a
single genomic sequence, which sim4 as an external program can. In
version 2.8.0 of emboss ESIM4 alignments don't work (format=3), it finds
the correct reagion to align, but it seems to "extract" the wrong
genomic region to make the alignment (it was OK in version 2.6.0 of
EMBOSS). 

Stefanie

>> Is there an esim4 man page?
> 
> I don't recall writing one.  esim4 -h will list the command line
> options and what they do, to the extent that could be decipered
> from the original source code.
> 
> Regards,
> 
> David Mathog
> mathog at caltech.edu
> Manager, Sequence Analysis Facility, Biology Division, Caltech
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