[EMBOSS] seqret

[Stefanie De Bodt]

Dear,

I am using the EMBOSS program SEQRET to retrieve sequences in EMBL 
format out a local EMBL database. Retrieving embl formatted sequences 
works. On your web site, I found an option, -feature, which allows 
additional information to be included in the embl result file. This 
however didn´t work, not in interactive mode and not using the following 
command line

seqret -feature -sequence DBname:AC -outseq embl:AC.embl

I get several warnings and I can´t figure out what the reason for these 
warnings is.

Warning: bad /cons_splice value '(5'site:YES,'
Warning: PVU13023: Bad value '(5'site:YES,' for tag '/cons_splice'
Warning: bad /cons_splice value '(5'site:no,'
Warning: RICAMYBA: Bad value '(5'site:no,' for tag '/cons_splice'
Warning: bad /cons_splice value '(5'site:no,'
Warning: RICAMYBB: Bad value '(5'site:no,' for tag '/cons_splice'
Warning: bad /cons_splice value '(5'site:no,'

Could you help me with this problem, is there a mistake in the command 
line or is it due to something else?

Best regards,

Stefanie De Bodt

-- 
Stefanie De Bodt
Research Group of Bioinformatics and Evolutionary Genomics
Department of Plant Systems Biology
Ghent University - Flemish Institute for Biotechnology (VIB)
Technologiepark 927, B-9052 Ghent, BELGIUM

Tel: +32 (0)9 3313692
Fax: +32 (0)9 3313809

stefanie.debodt at psb.ugent.be
http://www.psb.ugent.be/bioinformatics