[EMBOSS] CUTG
Carole Louis
louis at gtptech.com
Wed Mar 10 08:31:23 UTC 2004
Thank you. I'm looking for Spodoptera frugiperda. I thought it was
Espo.cut but it seems very different of the table I found at
http://www.kazusa.or.jp/codon/.
Le mar 09/03/2004 à 16:17, Graziano P. a écrit :
>
> Hi Carol,
> not every file but most are described in the README file from
> ftp://ftp.ebi.ac.uk/pub/databases/codonusage. Below I report the list
> I am using.
>
> Regards
> Graziano
>
> Easn.cut - Aspergillus nidulans
> Eath.cut - Arabidopsis thaliana
> Ebly.cut - Hordeum vulgare (Barley)
> Ebmo.cut - Bombyx mori (Silk Moth)
> Ebov.cut - Bos taurus (Cow)
> Ebsu.cut - Bacillus subtilis
> Ecel.cut - Caenorhabditis elegans
> Echi.cut - Chironomus sp.
> Echk.cut - Gallus sp. (Chicken)
> Eddi.cut - Dictyostelium discoideum
> Edro.cut - Drosophila melanogaster
> Eeco.cut - Escherichia coli
> Eham.cut - Cricetulus sp. & Mesocricetus sp.(Hamster)
> Ehum.cut - Homo sapiens
> Ekpn.cut - Klebsiella pneumoniae
> Emac.cut - Macaca sp
> Emus.cut - Mus sp. (Mouse)
> Emze.cut - Zea mays (Maize)
> Emzecp.cut - Zea mays chloroplast (Maize)
> Eneu.cut - Neurospora crassa
> Engo.cut - Neisseria gonorrheae
> Epea.cut - Pisum sativum (Pea)
> Epet.cut - Petunia sp.
> Epfa.cut - Plasmodium falciparum
> Ephv.cut - Phaseolus vulgaris (Lima bean)
> Epot.cut - Solanum tuberosum (Pototoe)
> Epse.cut - Pseudomonas sp.
> Erab.cut - Oryctolagus sp. (Rabbit)
> Erat.cut - Rattus sp. (Rat)
> Erhm.cut - Rhizobium meliloti
> Eric.cut - Oryza sativa (Rice)
> Eshp.cut - Ovis sp. (Sheep)
> Eslm.cut - Physarum polycephalum
> Esoy.cut - Glycine max (Soybean)
> Esta.cut - Staphylococcus aureus
> Esty.cut - Salmonella thphimurium
> Esus.cut - Strongylocentrotus purpuratus
> Etob.cut - Nicotiana tabacum (Tobacco)
> Etobcp.cut - Nicotiana tabacum chloroplast (Tobacco)
> Etom.cut - Lycopersicon esculentum (Tomato)
> Etrb.cut - Trypanosoma brucei
> Ewht.cut - Triticum aestivum (Wheat)
> Exel.cut - Xenopus laevis
> Eysc.cut - Saccharomyces cerevisiae
> Eyscmt.cut - Saccharomyces cerevisiae mitochondrion
> Eysp.cut - Schizosaccharomyces pombe
>
>
> ----- Original Message -----
>
> From: Carole Louis
> To: Liste Emboss
> Sent: Tuesday, March 09, 2004 4:05 PM
> Subject: [EMBOSS] CUTG
>
> Hi,
>
> I extracted the CUTG database with cutgextract without any
> problem but I'd like to have a more explicite name for my .cut
> files ? Is it possible to obtain it ?
>
> Thanks,
>
> --
> Carole Louis <louis at gtptech.com>
> GTP Technology
--
Carole Louis <louis at gtptech.com>
GTP Technology
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