[EMBOSS] CUTG

[Graziano P.]

Hi Carol,
not every file but most are described in the README file from ftp://ftp.ebi.ac.uk/pub/databases/codonusage. Below I report the list I am using.

Regards
Graziano

Easn.cut  -  Aspergillus nidulans
Eath.cut  -  Arabidopsis thaliana
Ebly.cut  -  Hordeum vulgare (Barley)
Ebmo.cut  -  Bombyx mori (Silk Moth)
Ebov.cut  -  Bos taurus (Cow)
Ebsu.cut  -  Bacillus subtilis
Ecel.cut  -  Caenorhabditis elegans
Echi.cut  -  Chironomus sp.
Echk.cut  -  Gallus sp. (Chicken)
Eddi.cut  -  Dictyostelium discoideum
Edro.cut  -  Drosophila melanogaster
Eeco.cut  -  Escherichia coli
Eham.cut  -  Cricetulus sp. & Mesocricetus sp.(Hamster)
Ehum.cut  -  Homo sapiens
Ekpn.cut  -  Klebsiella pneumoniae
Emac.cut  -  Macaca sp
Emus.cut  -  Mus sp. (Mouse)
Emze.cut  -  Zea mays (Maize)
Emzecp.cut  -  Zea mays chloroplast (Maize)
Eneu.cut  -  Neurospora crassa
Engo.cut  -  Neisseria gonorrheae
Epea.cut  -  Pisum sativum (Pea)
Epet.cut  -  Petunia sp.
Epfa.cut  -  Plasmodium falciparum
Ephv.cut  -  Phaseolus vulgaris (Lima bean)
Epot.cut  -  Solanum tuberosum (Pototoe)
Epse.cut  -  Pseudomonas sp.
Erab.cut  -  Oryctolagus sp. (Rabbit)
Erat.cut  -  Rattus sp. (Rat)
Erhm.cut  -  Rhizobium meliloti
Eric.cut  -  Oryza sativa (Rice)
Eshp.cut  -  Ovis sp. (Sheep)
Eslm.cut  -  Physarum polycephalum
Esoy.cut  -  Glycine max (Soybean)
Esta.cut  -  Staphylococcus aureus
Esty.cut  -  Salmonella thphimurium
Esus.cut  -  Strongylocentrotus purpuratus
Etob.cut  -  Nicotiana tabacum (Tobacco)
Etobcp.cut  -  Nicotiana tabacum chloroplast (Tobacco)
Etom.cut  -  Lycopersicon esculentum (Tomato)
Etrb.cut  -  Trypanosoma brucei
Ewht.cut  -  Triticum aestivum (Wheat)
Exel.cut  -  Xenopus laevis
Eysc.cut  -  Saccharomyces cerevisiae
Eyscmt.cut  -  Saccharomyces cerevisiae mitochondrion
Eysp.cut  -  Schizosaccharomyces pombe


----- Original Message ----- 
  From: Carole Louis 
  To: Liste Emboss 
  Sent: Tuesday, March 09, 2004 4:05 PM
  Subject: [EMBOSS] CUTG


  Hi,

  I extracted the CUTG database with cutgextract without any problem but I'd like to have a more explicite name for my .cut files ? Is it possible to obtain it ?

  Thanks,

        -- 
        Carole Louis <louis at gtptech.com>
        GTP Technology  
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