[EMBOSS] question about "recoder" tool

[Gary Williams, Tel 01223 494522]

   This uses the EMBOSS REBASE data files in 'data/REBASE/*' under the
   EMBOSS installation directory.

   These files must first be set up using the program 'rebaseextract'.
   Running 'rebaseextract' may be the job of your system manager.

   See the documentation of rebaseextract for more details:
   http://www.rfcgr.mrc.ac.uk/Software/EMBOSS/Apps/rebaseextract.html

Gary


yann-francois.bizouerne at bayercropscience.com wrote:
> 
> Hi,
> 
> I have the Emboss version  2.7.1 installed on our servers.
> I try to execute the "recoder" tool as below.
> 
>    > recoder
>    Remove restriction sites but maintain the same translation
>    Nucleic acid sequence: seq.test
>    Comma separated enzyme list [all]:
>    Results file name [aa749534.recoder]:
> 
>       EMBOSS An error in recoder.c at line 380:
>    Aborting...restriction file not found
> 
> It seems to not found the restriction file. Where can I get one ? And where put
> it in Emboss directory ?
> 
> Thanks in advance
> 
> Yann-François BIZOUERNE
> BioInformatic Team
> BAYER CropScience
> 4, rue Pierre Fontaine
> 91058 Evry Cedex
> FRANCE
> Phone:      33-(0) 1-69-47-61-56
> FAX:        33-(0) 1-69-47-61-42
> E-mail:     yann-francois.bizouerne at bayercropscience.com
> Intranet: http://bioinfo.evry.fr.bayercropscience/

-- 
Gary Williams
MRC Rosalind Franklin Centre for Genomics Research
Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SB, UK
Tel: +44 1223 494522			Fax: +44 1223 494512
E-mail: gwilliam at rfcgr.mrc.ac.uk	Web: http://www.rfcgr.mrc.ac.uk