[EMBOSS] error in ajacd.c

[kenix y]

Hi,

Thanks for replying.
I don't seems to have EMBOSS in /usr/share, it's in /opt/BioBrew.
And the paths you gave me
>declare -x EMBOSS_ACDROOT="/usr/share/EMBOSS/acd"
>declare -x EMBOSS_DATA="/usr/share/EMBOSS/data"
>declare -x EMBOSS_DATABASE_DIR="/usr/share/EMBOSS/data"
>declare -x EMBOSS_DOCROOT="/usr/share/EMBOSS/doc"

I find them in /opt/BioBrew/EMBOSS/2.6.0/share/EMBOSS

Should the paths be changed to
>declare -x EMBOSS_ACDROOT="/opt/BioBrew/EMBOSS/2.6.0/share/EMBOSS/acd"
>declare -x EMBOSS_DATA="/opt/BioBrew/EMBOSS/2.6.0/share/EMBOSS/data"
>declare -x 
>EMBOSS_DATABASE_DIR="/opt/BioBrew/EMBOSS/2.6.0/share/EMBOSS/data"
>declare -x EMBOSS_DOCROOT="/opt/BioBrew/EMBOSS/2.6.0/share/EMBOSS/doc"

in my case?

Thank you.

>From: Bent Terp <Bent.Terp at biosci.ki.se>
>To: EMBOSS list <emboss at hgmp.mrc.ac.uk>
>Subject: Re: [EMBOSS] error in ajacd.c
>Date: Mon, 26 Jul 2004 08:26:52 +0200
>
>On Mon, 2004-07-26 at 05:51, kenix y wrote:
> > Hi,
> >
> > When I try to run any emboss application, I got the following error:
> > error while loading shared libraries: libnucleus.so.0: cannot open 
>shared
> > object file: no such file or directory.
> > But the file is located at /opt/BioBrew/EMBOSS/2.6.0/lib/
> >
> > After I tried to set up the environment for using EMBOSS in ~/.bashrc
> > export LD_LIBRARY_PATH=/opt/BioBrew/EMBOSS/2.6.0/lib:$LD_LIBRARY_PATH
> >
> > the error changed to
> > EMBOSS An error in ajacd.c at line 1534: acdfile
> > '/home/build/BuildRoot-ia32/BUILD/EMBOSS-2.6.0/emboss/acd/wossname.acd' 
>not
> > opened.
> >
> > Does anyone knows how to solve this?
>
>You need your environment set up as in the installation docs. Basically
>add this to your .bashrc:
>declare -x EMBOSS_ACDROOT="/usr/share/EMBOSS/acd"
>declare -x EMBOSS_DATA="/usr/share/EMBOSS/data"
>declare -x EMBOSS_DATABASE_DIR="/usr/share/EMBOSS/data"
>declare -x EMBOSS_DOCROOT="/usr/share/EMBOSS/doc"
>
>substituting /opt/BioBrew/EMBOSS for /usr/share/EMBOSS
>
><shameless self-plug> alternatively, if you're using redhat, you can
>install EMBOSS through <a href="http://apt.bea.ki.se>BioRPMS</a>
></shameless self-plug>
>
> >
> > Thank you
> >
> > Rgds,
> > kenix
> >
> > _________________________________________________________________
> > Get 10mb of inbox space with MSN Hotmail Extra Storage
> > http://join.msn.com/?pgmarket=en-sg
>--
>MVH / With kind regards,
>         Bent Terp <Bent.Terp at biosci.ki.se>
>         System Administrator
>         Bioinformatics and Expression Analysis Core Facility
>         Karolinska Institute, Department of Biosciences
>         Hälsovagen 7-9, 141 57 Huddinge, Sweden

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