[EMBOSS] Staden and EMBOSS 2.8.O

Guy Bottu gbottu at ben.vub.ac.be
Fri Feb 13 20:15:46 UTC 2004


	Dear colleagues,

As you all know, with EMBOSS 2.8.O the syntax of the ACD files has 
changed. An unfortunate consequence is that EMBOSS programs do not work 
well or not at all anymore under Staden spin or spin2. The script 
acd2tcl.tcl should be updated as to handle new things like the rename 
required -> standard and the use of $acdprotein. Unfortunately there is no 
support for Staden anymore (well, it was recently announced that James 
Bonfield is working at Sanger Centre, but according to the Web page he is 
only developing gap4, not spin). Does someone know more about it ?

	Guy Bottu,
	BEN



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