Fwd: [EMBOSS] GCG: FRAMEALIGN- align protein-6 frames of DNA

[Stefanie Lager]

Also the programs

protal2dna: http://bioweb.pasteur.fr/docs/softgen.html#PROTAL2DNA

and

RevTrans: http://www.cbs.dtu.dk/services/RevTrans/

Might be useful

Stefanie


> I think wise2 (the estwise and estwisedb programs) does this .
> 
> http://www.ebi.ac.uk/Wise2/
> 
> Stefanie
> 
>> Hello,
>> 
>> Is there an EMBOSS equivalent of GCG:FrameAlign?
>> 
>> It creates an optimal alignment of the best segment of similarity
>> (local alignment) between a protein sequence and the codons in
>> all possible reading frames on a single strand of a nucleotide
>> sequence. Optimal alignments may include reading frame shifts.
>> 
>> This is a very crucial tool for the evolutionary biologists.
>> 
>> -thanks
>> 
>> -laxman
>> 
>> 
>> 
>> 
>> 
>> Lakshmanan Iyer, Ph. D.
>> 
>> Computational Biologist
>> 
>> Manager of Collaboration and Training
>> 
>> Computational Biology Group
>> 
>> Bauer Center for Genomics Research
>> 
>> Bauer Laboratory
>> 
>> 7 Divinity Ave.
>> 
>> Cambridge, MA 02138
>> 
>> www.cgr.harvard.edu <http://www.cgr.harvard.edu>
>> 
>> Phone:617-384-7647
>> 
>> Fax: 617-495-2196
>> 
>> 
> 

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