Fwd: [EMBOSS] GCG: FRAMEALIGN- align protein-6 frames of DNA
Stefanie Lager
stefanielager at fastmail.ca
Mon Sep 29 05:14:45 UTC 2003
I think wise2 (the estwise and estwisedb programs) does this .
http://www.ebi.ac.uk/Wise2/
Stefanie
> Hello,
>
> Is there an EMBOSS equivalent of GCG:FrameAlign?
>
> It creates an optimal alignment of the best segment of similarity
> (local alignment) between a protein sequence and the codons in all
> possible reading frames on a single strand of a nucleotide
> sequence. Optimal alignments may include reading frame shifts.
>
> This is a very crucial tool for the evolutionary biologists.
>
> -thanks
>
> -laxman
>
>
>
>
>
> Lakshmanan Iyer, Ph. D.
>
> Computational Biologist
>
> Manager of Collaboration and Training
>
> Computational Biology Group
>
> Bauer Center for Genomics Research
>
> Bauer Laboratory
>
> 7 Divinity Ave.
>
> Cambridge, MA 02138
>
> www.cgr.harvard.edu <http://www.cgr.harvard.edu>
>
> Phone:617-384-7647
>
> Fax: 617-495-2196
>
>
_________________________________________________________________
http://fastmail.ca/ - Fast Secure Web Email for Canadians
More information about the EMBOSS
mailing list