[EMBOSS] needle output

[Derek Gatherer]

That's what I need!

thanks

At 13:35 17/11/2003 +0100, David.Bauer at SCHERING.DE wrote:
>Hello,
>
>you could use seqretsplit to create separate fasta files.
>
>Cheers,
>David.
>
>
>
> 
>
>                     Derek 
> Gatherer
>                     <d.gatherer at vir.g 
>
>                     la.ac.uk>                An:     emboss at embnet.org 
>
>                     Gesendet 
> von:            Kopie:
>                     owner-emboss at hgmp        Thema:  [EMBOSS] needle 
> output
>                     .mrc.ac.uk 
>
> 
>
> 
>
>                     17.11.03 
> 13:28
> 
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> 
>
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>
>Hi
>
>I am using needle like this
>
>needle file1 file2 -gapopen 10.0 -gapextend 0.5 -out outfile.needle
>-aformat fasta
>
>which gives me a nice FASTA-formatted file with both sequences.  However, I
>
>would like each sequence to be output into a separate FASTA-formatted
>file.  Is there a command line toggle that does this?
>
>cheers
>Derek