Antwort: [EMBOSS] needle output

[David.Bauer at SCHERING.DE]

Hello,

you could use seqretsplit to create separate fasta files.

Cheers,
David.



                                                                                                             
                      Derek Gatherer                                                                         
                      <d.gatherer at vir.                                                                       
                      gla.ac.uk>               An:      emboss at embnet.org                                    
                      Gesendet von:            Kopie:                                                        
                      owner-emboss at hgm         Thema:   [EMBOSS] needle output                               
                      p.mrc.ac.uk                                                                            
                                                                                                             
                                                                                                             
                      17.11.03 13:28                                                                         
                                                                                                             
                                                                                                             




Hi

I am using needle like this

needle file1 file2 -gapopen 10.0 -gapextend 0.5 -out outfile.needle
-aformat fasta

which gives me a nice FASTA-formatted file with both sequences.  However, I

would like each sequence to be output into a separate FASTA-formatted
file.  Is there a command line toggle that does this?

cheers
Derek