question about databases setup
Jean Mao
maoj at mail.nih.gov
Wed May 21 16:21:43 UTC 2003
Hi, I am new to emboss. have question in database setup.
I have a file in the directory /data/maoj/emboss/db/mouse/ called 'test.dat'. this file has 9 entries in embl format. i ran dbiflat, acnum.hit, acnum.trg, division.lkp, entrynam.idx were generated.
then I setup a .embossrc file in my home dir as follows :
-------------------------------------------------------------------------------------------
# Logfile - set this to a file that any user can append to
# and EMBOSS applications will automatically write log information
# SET emboss_logfile /home/db/emboss/tmp/log
DB test [
type: N
method: emblcd
format: embl
dir: /data/maoj/emboss/db/mouse
file: "*.dat"
release: "1"
comment: "Test DB"
]
-------------------------------------------------
when i run seqret and try to retrieve 1 of the 9 entries, i got following error:
% seqret
Reads and writes (returns) sequences
Input sequence(s): test:AB001363
Warning: Cannot open division file '<null>' for database 'test'
Warning: seqCdQry failed
Error: Unable to read sequence 'test:AB001363'
Please help. Thank you in advance.
Jean
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.open-bio.org/pipermail/emboss/attachments/20030521/34ed2c6a/attachment-0001.html>
More information about the EMBOSS
mailing list