Search for organism of entry
yann-francois.bizouerne at bayercropscience.com
yann-francois.bizouerne at bayercropscience.com
Thu May 15 15:29:46 UTC 2003
Hello,
I have install EMBOSS on our server since recently. I reallly enjoy a lot the
different tools but I have a little problem and I can't find the solution
anywhere.
I have index the SwissProt database with the command line :
dbiflat -idformat SWISS -directory . -filenames sprot.dat -dnname sprot
-fields acnum,seqvn,des,keyword,taxon
So after that I could find sequence information when I am looking by for
particular organism or keyword.
For the moment What I could retrieve with the accession number is the following
:
>infoseq sprot:P15711
Displays some simple information about sequences
# USA Name Accession Type Length Description
ian-id:104K_THEPA 104K_THEPA P15711 P 924 104 kDa
microneme-rhoptry antigen.
And when I am looking with the organism I obtain :
>infoseq sprot-org:"*Theileria*" -outfile stdout
Displays some simple information about sequences
# USA Name Accession Type Length Description
sprot-id:104K_THEPA 104K_THEPA P15711 P 924 104 kDa
microneme-rhoptry antigen.
So now I want to know if I could for one particular entry (sprot:P15711) find
the Organism (Theileria prava) or not ?
Thanks in advance for your answer.
Yann-François BIZOUERNE
BioInformatic Team
BAYER CropScience
1, rue Pierre Fontaine
91058 Evry Cedex
FRANCE
Phone: 33-(0) 1-69-47-61-56
FAX: 33-(0) 1-69-47-61-42
E-mail: yann-francois.bizouerne at bayercropscience.com
Intranet: http://bioinfo.evry.fr.bayercropscience/
More information about the EMBOSS
mailing list