Accessing online databases...

[David Martin]

On 13/3/03 10:54 pm, "Jack Leunissen" <Jack.Leunissen at wur.nl> wrote:

> Also note the change from SRS5 to SRS7. Version 5 is out of date
> by several years. I guess that manual needs some cleaning up...

There have been a lot of changes since I last updated it. Someone else had
offered to update it with th elatest developments as I have not had the
time.

..d

> 
> Cheers,
> Jack
> 
> 
> 
> Jack A.M. Leunissen
> Genome Informatics
> Wageningen University
> 6703 HA Wageningen, NL
> 
> 
> 
>> -----Original Message-----
>> From: owner-emboss at hgmp.mrc.ac.uk
>> [mailto:owner-emboss at hgmp.mrc.ac.uk] On Behalf Of
>> ableasby at hgmp.mrc.ac.uk
>> Sent: Thursday, 13 March, 2003 11:31
>> To: emboss at hgmp.mrc.ac.uk; squiresb at macrogenics.com
>> Subject: Re: Accessing online databases...
>> 
>> 
>> Burke,
>> 
>> You need to rename emboss.default.template to emboss.default.
>> 
>> The URL given in the admin guide is out of date. You'll
>> have to replace your entry with something like:
>> 
>> DB mydb [
>> # required parameters
>> method: url
>> format: genbank
>> url: 
>> "http://www.infobiogen.fr/srs7bin/cgi-bin/wgetz?-e+-ascii+[gen
> bank-id:%s]"
> #optional parameters
> type: N
> comment: "Genbank by ID from InfoBiogen"
> ]
> 
> 
> HTH
> 
> Alan Bleasby
> HGMP
> 

-- 
David Martin PhD
Bioinformatics Scientific Officer
Post-Genomics and Molecular Interactions Centre
University of Dundee