Accessing online databases...

[Jack Leunissen]

Also note the change from SRS5 to SRS7. Version 5 is out of date 
by several years. I guess that manual needs some cleaning up...

Cheers,
Jack



Jack A.M. Leunissen
Genome Informatics
Wageningen University
6703 HA Wageningen, NL



> -----Original Message-----
> From: owner-emboss at hgmp.mrc.ac.uk 
> [mailto:owner-emboss at hgmp.mrc.ac.uk] On Behalf Of 
> ableasby at hgmp.mrc.ac.uk
> Sent: Thursday, 13 March, 2003 11:31
> To: emboss at hgmp.mrc.ac.uk; squiresb at macrogenics.com
> Subject: Re: Accessing online databases...
> 
> 
> Burke,
> 
> You need to rename emboss.default.template to emboss.default.
> 
> The URL given in the admin guide is out of date. You'll
> have to replace your entry with something like:
> 
> DB mydb [
> # required parameters
> method: url
> format: genbank
> url: 
> "http://www.infobiogen.fr/srs7bin/cgi-bin/wgetz?-e+-ascii+[gen
bank-id:%s]"
#optional parameters
type: N
comment: "Genbank by ID from InfoBiogen"
]


HTH

Alan Bleasby
HGMP