tempdata availability
Thomas Keller
kellert at ohsu.edu
Thu Mar 13 22:58:48 UTC 2003
Greetings,
I must be missing something obvious. I know eprimer3 is working, I've
used it with my own datafiles.
But when I try to use the test databases I get the following:
kellert% eprimer3 tembl:hsfau1 hsfau.eprimer3 -explain
Picks PCR primers and hybridization oligos
Warning: Cannot open division file '<null>' for database 'tembl'
Warning: seqCdQry failed
Error: Unable to read sequence 'tembl:hsfau1'
###########################
My embossdata output follows, but I thought emboss.default would be
used to look in /my_emboss_path/EMBOSS/test for the test dbs. I have
set my_emboss_path in emboss.defaults.
kellert% embossdata
Finds or fetches the data files read in by the EMBOSS programs
# The following directories can contain EMBOSS data files.
# They are searched in the following order until the file is found.
# If the directory does not exist, then this is noted below.
# '.' is the UNIX name for your current working directory.
. Exists
.embossdata Does not
exist
/Users/kellert Exists
/Users/kellert/.embossdata Does not
exist
/usr/local/biotools/share/EMBOSS/data/ Exists
#################
Thanks for your help,
Tom
Thomas J. Keller, Ph.D.
Director, MMI Core Facility
Oregon Health & Science University
3181 SW Sam Jackson Park Rd.
Portland, OR, USA, 97239
http://www.ohsu.edu/core
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