tempdata availability

Thomas Keller kellert at ohsu.edu
Thu Mar 13 22:58:48 UTC 2003


Greetings,
I must be missing something obvious. I know eprimer3 is working, I've 
used it with my own datafiles.
But when I try to use the test databases I get the following:

kellert% eprimer3 tembl:hsfau1 hsfau.eprimer3 -explain
Picks PCR primers and hybridization oligos
Warning: Cannot open division file '<null>' for database 'tembl'
Warning: seqCdQry failed
Error: Unable to read sequence 'tembl:hsfau1'
###########################
My embossdata output follows, but I thought emboss.default would be 
used to look in  /my_emboss_path/EMBOSS/test for the test dbs. I have 
set my_emboss_path in emboss.defaults.

kellert% embossdata
Finds or fetches the data files read in by the EMBOSS programs
# The following directories can contain EMBOSS data files.
# They are searched in the following order until the file is found.
# If the directory does not exist, then this is noted below.
# '.' is the UNIX name for your current working directory.

.                                                            Exists
.embossdata                                                  Does not 
exist
/Users/kellert                                               Exists
/Users/kellert/.embossdata                                   Does not 
exist
/usr/local/biotools/share/EMBOSS/data/                       Exists
#################
Thanks for your help,
Tom
Thomas J. Keller, Ph.D.
Director, MMI Core Facility
Oregon Health & Science University
3181 SW Sam Jackson Park Rd.
Portland, OR, USA,   97239

http://www.ohsu.edu/core




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