Mutiple alignement of blast results
Fernan Aguero
fernan at iib.unsam.edu.ar
Wed Mar 5 16:44:10 UTC 2003
+----[ Jean-Christophe AME <ame at esbs.u-strasbg.fr> (05.Mar.2003 12:50):
|
| Hi all,
| I am looking for a program (preferably for unix or Mac) that does a
| multiple alignment of a blast result. There used to be Mulblast
| (http://www.cbs.cnrs.fr/Soft_ModMol/MulBlast/MulBlast-en.html) but it
| doesn't seem to work anymore with the last blast outputs.
|
+----]
This is exactly what blixem does:
Blixem - display Blast matches as a multiple alignment.
Reference: Sonnhammer ELL & Durbin R (1994). A workbench
for Large Scale Sequence Homology Analysis. Comput. Applic.
Biosci. 10:301-307.
http://www.cgr.ki.se/cgr/groups/sonnhammer/Blixem.html
Hope this helps,
Fernan
--
F e r n a n A g u e r o
http://genoma.unsam.edu.ar/~fernan
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