possible buglet seqret?

[Aengus Stewart]

Hi,

I am just now setting up database access by EMBOSS ( yes late on the
scene as usual ) as I have undated to EMBOSS 2.6
Currently I still have to run GCG in parallel :-( with EMBOSS so for my
testset I have been using GCG formatted swissnew.

I have the following definition in my emboss.default


After formatting

When I run

seqret -feature -osf swiss

I dont get the feature table in the resultant output file if the feature
table is only one line!

eg

swissnew:6pgd_mouse - 1 line FT DOESNT work
swissnew:3bp5_human - 2 line FT DOES work
swissnew:143c_arath - 1 line FT DOESNT work
swissnew:27aa_arath - 2 line FT DOES work

I also tried with getting the raw data and using dbiflat instead of
dbigcg with the same results.


Regards
Aengus




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Aengus Stewart                               
aengus.stewart at cancer.org.uk
Computational Genome Analysis Laboratory      Tel: +44 (0)20 7269 3679
Cancer Research UK
Lincoln's Inn Fields, Holborn, London, WC2A 3PX, UK
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