[EMBOSS] remap and GCG mapplot

Stefanie Lager stefanielager at fastmail.ca
Wed Dec 3 13:08:30 UTC 2003


The program TACG ( http://tacg.sourceforge.net/) can substitute for
some of the GCG applications missing in EMBOSS. Like 

mapplot (tacg -l -s )
map (tacg -T3,1 -sL )
mapsort (tacg -cF2 )
mapgel (tacg -g10 -s )
findpatterns (tacg -S2 -R 'path/to/a/pattern/file )

Stefanie

> Hello,
> 
> I am writing for a request for emboss. It would be great that
> emboss could integrate something similar to the very useful (my
> point of view) GCG's program MAPPLOT (a graphical representation
> of a restriction map). I am sure that could be easily added to
> emboss's remap or restrict.
> With this feature added I would definitively not use anymore GCG.
> Any idea. Thanks for the great job.
> Jean-Christophe
> 
> ________________________
> Jean-Christophe Amé, PhD
> U.P.R. 9003 du CNRS - Cancérogénèse et Mutagénèse Moléculaire et
> Structurale
> École Supérieure de Biotechnologie de Strasbourg
> Pôle API
> Parc d'innovation, Boulevard Sébastien Brant
> BP 10413
> 67412 ILLKIRCH CEDEX
> France
> 
> tel.: 33 3 90 24 47 05
> Fax.: 33 3 90 24 46 86

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