[EMBOSS] JEMBOSS login prob

Dr T. Carver tcarver at hgmp.mrc.ac.uk
Tue Aug 12 19:28:01 UTC 2003


Hi Aengus

I am guessing that you cannot run any of the EMBOSS applications as well?
Or can you run embossversion via the interface for example?
You should check that as root you have changed the permissions on:

chown root $EMBOSS_INSTALL/bin/jembossctl
chmod u+s $EMBOSS_INSTALL/bin/jembossctl

Btw, why did you need to run deploy.csh? Did the services not get deployed
with the install script?

Tim

> Hi,
>
> I am running the jemboss client at the command line ( runJemboss.csh )
> and I am having problems whenever attempting to select "Local and remote
> files".
>
> I get the following in a java dialogue box
>
> "Login to server failed
> please check your login details"
>
> at the command line I get
> "Exception in PrivateRequest Authentication Failed"
>
> and in the log file catalina.out I get
> "Failed Authorisation aengus
> STDERR java_pipe_read timeout
> java_rcv error
> Pipe Recv error 1"
>
> What makes it strange it that it accepts the username and password on
> login.
>
>
> Tomcat is stopped and started using tomstop/tomstart and run by user
> tomcat
>
> deploy.csh was run on the command line.
>
> I am guessing this is a permissions problem but havent a clue which file
> needs changing.
>
> Help!
>
>
> Cheers
> Aengus
>






More information about the EMBOSS mailing list