emma

[Peter Rice]

Graziano P. wrote:
> I am trying to use the following emma options: -norgap and -nopercent, but
> when I write
> 
> emma sequence.fasta -norgap
> 
> the program returns the following error message:
> 
>    EMBOSS An error in ajacd.c at line 11262:
> unknown qualifier -norgap
> 
> the same is if I write
> 
> emma sequence.fasta -nopercent
> 
>    EMBOSS An error in ajacd.c at line 11262:
> unknown qualifier -nopercent
> 
> I have seen in emma.acd file and these two qualifiers exist!!

Oops. We are working on it.

"no" in front of a qualifier is automatically removed, and the value is set 
to "N". It should check (a) that the qualifier is boolean and (b) that the 
name is correct.

Qualifiers should not begin with "no".

For emma, -nopercent and -norgap will need new names to work correctly. We 
should make it -percent and -rgap :-)

> Anyone have alredy found this problem?

This is the same as the problem reported this morning ... before today, 
nobody had reported it !!!

Peter

-- 
------------------------------------------------
Peter Rice, LION Bioscience Ltd, Cambridge, UK
peter.rice at uk.lionbioscience.com +44 1223 224723