emma
Graziano P.
areagp61 at yahoo.it
Thu Sep 12 14:39:04 UTC 2002
Hi,
I am trying to use the following emma options: -norgap and -nopercent, but
when I write
emma sequence.fasta -norgap
the program returns the following error message:
EMBOSS An error in ajacd.c at line 11262:
unknown qualifier -norgap
the same is if I write
emma sequence.fasta -nopercent
EMBOSS An error in ajacd.c at line 11262:
unknown qualifier -nopercent
I have seen in emma.acd file and these two qualifiers exist!!
Lines in emma.acd file about these two options are:
bool: norgap [
optional: "$(prot)"
default: "No"
information: "No residue specific gaps"
help: "'Residue specific penalties' are amino acid specific gap penalties
that ......"
]
bool: nopercent [
optional: "@(!$(slow))"
default: "No"
information: "Fast pairwise alignment: similarity scores: suppresses
percentage score"
]
Anyone have alredy found this problem?
Thanks
Graziano
-----------------------------------------------
Graziano Pappadà
areagp61 at yahoo.it
----------------------------------------------
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