this format is not readable by seqret
Joerg Muehlisch
jmuehlis at uni-muenster.de
Tue Oct 15 09:03:19 UTC 2002
Hello there,
my name is Jörg Mühlisch and I work in the Departement of pediatric
hematology and oncology at the University of Munster (Germany). As a
Scientist I use emboss on linux.
So here is my first question:
I have a sample of sequences in different formats. Before I try to index
them tested them for readablility by seqret:
find ./ -name "*" -exec seqret -osf fasta {} ../Sequencesothers/{} /;
Some of my files are not readable and I do not know the name of their
format:
Contig 1 (1,506)
Contig Length: 506 bases
Average Length/Sequence: 458 bases
Total Sequence Length: 1375 bases
Top Strand: 3 sequences
Bottom Strand: 0 sequences
Total: 3 sequences
^^
AAMSCWATAGGGCGAATTGGAGCTCCACCGCGGTGGCGGYCGC...
May be there is a way to change this format in an apropriate way.
Thanks
Jörg Mühlisch
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