Suggestion for new use for EMBOSS program

Charles Plessy charles at moulinette.dyndns.org
Thu Nov 7 13:20:42 UTC 2002


> The best replacement I've found is the EMBOSS program tfscan!

> Obviously, I could write a script to wrap tfscan but I'd like to
> avoid this.  A new program with this functionality would be beneficial
> for the EMBOSS package.

An alternative would be to write a script that builds a
transfac-format database from a flatfile containing names and
corresponding consensus (This would also allow to migrate the
pattern.dat file of GCG).

Charles



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