How do I specific human genome CHR_01 database at .embossrc file
Zheng Jin Tu
ztu at msi.umn.edu
Fri Jun 14 14:03:59 UTC 2002
Really thanks for these kindly people reply for my message. Most people sugguest
method: emblcd
format: genbank
It works well with this definition.
Best regards,
Zheng Jin Tu
Supercomputing Institute
University of Minnesota
________________________________________________________________________
On Fri, 14 Jun 2002, Charles Plessy wrote:
> Hi,
>
> I used home sequences so I had to reformat the headers to something
> "ncbi compliant" like lcl|foo.
>
> see the formatdb readme for more info :
> http://www.inb.mu-luebeck.de/biosoft/blast/README.formatdb
>
> I had to use formatdb vith the option -o T , to generate more files.
>
> I then used dbiflat normally
>
> Hese is an extract of my embossrc :
>
> DB ngn [
> type: N
> method: blast
> format: ncbi
> dir: /home/charles/bioinfo/blast
> indexdir: /home/charles/bioinfo/blast/ngn
> file: "ngn"
> release: "0.0"
> ]
>
> Charles
>
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