Compiling EMBOSS 2.4.1 on Mac OS X

Jason Curole jcurole at cisunix.unh.edu
Mon Jul 29 15:07:02 UTC 2002


Dear users,

I am trying to compile the EMBOSS 2.4.1 package on OS X.  I have installed X
Darwin and this runs okay.  I run configure and that also seem to run okay.
I then make and it runs for a while but eventually bombs out on the error
make[3]: *** No rule to make target `alignment_differences_group.html',.
The last few lines of terminal text prior to the fail are pasted in below.
I appreciate any help anyone could provide.

Thanks, Jason

Making install in wormpep
make[3]: Nothing to be done for `install-exec-am'.
/bin/sh ../../mkinstalldirs /usr/local/share/EMBOSS/test/wormpep
mkdir /usr/local/share/EMBOSS/test/wormpep
 /usr/bin/install -c -m 644 wormpep
/usr/local/share/EMBOSS/test/wormpep/wormpep
 /usr/bin/install -c -m 644 acnum.hit
/usr/local/share/EMBOSS/test/wormpep/acnum.hit
 /usr/bin/install -c -m 644 acnum.trg
/usr/local/share/EMBOSS/test/wormpep/acnum.trg
 /usr/bin/install -c -m 644 division.lkp
/usr/local/share/EMBOSS/test/wormpep/division.lkp
 /usr/bin/install -c -m 644 entrynam.idx
/usr/local/share/EMBOSS/test/wormpep/entrynam.idx
 /usr/bin/install -c -m 644 des.hit
/usr/local/share/EMBOSS/test/wormpep/des.hit
 /usr/bin/install -c -m 644 des.trg
/usr/local/share/EMBOSS/test/wormpep/des.trg
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
Making install in doc
Making install in manuals
make[3]: Nothing to be done for `install-exec-am'.
/bin/sh ../../mkinstalldirs /usr/local/share/EMBOSS/doc/manuals
mkdir /usr/local/share/EMBOSS/doc
mkdir /usr/local/share/EMBOSS/doc/manuals
 /usr/bin/install -c -m 644 admin.sty
/usr/local/share/EMBOSS/doc/manuals/admin.sty
 /usr/bin/install -c -m 644 admin.tex
/usr/local/share/EMBOSS/doc/manuals/admin.tex
 /usr/bin/install -c -m 644 admin.aux
/usr/local/share/EMBOSS/doc/manuals/admin.aux
 /usr/bin/install -c -m 644 admin.dvi
/usr/local/share/EMBOSS/doc/manuals/admin.dvi
 /usr/bin/install -c -m 644 admin.log
/usr/local/share/EMBOSS/doc/manuals/admin.log
 /usr/bin/install -c -m 644 admin.pdf
/usr/local/share/EMBOSS/doc/manuals/admin.pdf
 /usr/bin/install -c -m 644 admin.ps
/usr/local/share/EMBOSS/doc/manuals/admin.ps
 /usr/bin/install -c -m 644 admin.toc
/usr/local/share/EMBOSS/doc/manuals/admin.toc
 /usr/bin/install -c -m 644 adminguide.tar.gz
/usr/local/share/EMBOSS/doc/manuals/adminguide.tar.gz
 /usr/bin/install -c -m 644 program.ps.gz
/usr/local/share/EMBOSS/doc/manuals/program.ps.gz
 /usr/bin/install -c -m 644 EMBOSS-FreeBSD-HOWTO.txt
/usr/local/share/EMBOSS/doc/manuals/EMBOSS-FreeBSD-HOWTO.txt
 /usr/bin/install -c -m 644 emboss_qg.pdf
/usr/local/share/EMBOSS/doc/manuals/emboss_qg.pdf
 /usr/bin/install -c -m 644 emboss_qg.ps
/usr/local/share/EMBOSS/doc/manuals/emboss_qg.ps
Making install in programs
Making install in html
make[3]: *** No rule to make target `alignment_differences_group.html',
needed by `all-am'.  Stop.
make[2]: *** [install-recursive] Error 1
make[1]: *** [install-recursive] Error 1
make: *** [install-recursive] Error 1

Jason P. Curole    
Hubbard Center for Genome Studies and Program in Genetics
Genomics I
ETB
35 Colovos Road
University of New Hampshire
Durham NH 03824-3534
http://tilapia.unh.edu/WWWPages/curole/curole.html




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