Interactive commands

[Claude Bonnard]

Thanks a lot,  Peter!

This was -for an unknown reason the emboss.default which contained:
set emboss_filter 1

removing it  solved this .

Thanks also to all of you for your very fast replies!

Regards,

Claude

On Jul 24,  9:34am, Peter Rice wrote:
> Subject: Re: Interactive commands
> Claude Bonnard wrote:
> >
> > %checktrans
> >
> > it hangs untill a CTRL-C 8-(
> >
> > >>>>> YES, obviously a config problem..but which ?
> >
> > I think that I will need some clue..
>
> That's a big clue.
>
> % checktrans -auto
> Error: Unable to read sequence ''
>
> % checktrans -filter
> ... hangs until you hit control-C ... or control-D ... because it is now
> defaulting to read standard input.
>
> Control-C will stop it, Control-D will say "Error: Unable to read sequence
> 'stdin'"
>
> Try:
>
> % checktrans -nofilter
>
> If that works, then look for an EMBOSS_FILTER definition somewhere.
>
> HTH
>
> Peter
>
> --
> ------------------------------------------------
> Peter Rice, LION Bioscience Ltd, Cambridge, UK
> peter.rice at uk.lionbioscience.com +44 1223 224723
>-- End of excerpt from Peter Rice



-- 
Claude Bonnard Ph.D.
ISREC (Swiss Institute for Experimental Cancer Research)
Bioinformatics Group
Ch des Boveresses 155
CH-1066 Epalinges
Switzerland
phone: [41-21]-692-5891/-2236
  fax: [41-21]-652-6933