dbiblast command

Qingjuan Gu qingjuan at wistar.upenn.edu
Tue Jul 9 21:34:28 UTC 2002


Hi,

When I use dbiblast command for chromosome database :
# ls -l chromo*
-rwx------   1 root     system      264482 Jul  9 17:28 chromosome.nhr
-rwx------   1 root     system       24464 Jul  9 17:28 chromosome.nin
-rwx------   1 root     system       16248 Jul  9 17:28 chromosome.nnd
-rwx------   1 root     system         108 Jul  9 17:28 chromosome.nni
-rwx------   1 root     system      178637 Jul  9 17:28 chromosome.nsd
-rwx------   1 root     system        4092 Jul  9 17:28 chromosome.nsi
-rwx------   1 root     system   134588104 Jul  9 17:28 chromosome.nsq
-rwx------   1 root     system       84008 Jul  9 17:28 chromosome.ntd
-rwx------   1 root     system       12368 Jul  9 17:28 chromosome.nti
# dbiblast
Index a BLAST database
Database name: chromo
Database directory [.]:
Wildcard database filename [chromo]: chromosome.nin
Release number [0.0]:
Index date [00/00/00]:
         N : nucleic
         P : protein
         ? : unknown
Sequence type [unknown]: N
         1 : wublast and setdb/pressdb
         2 : formatdb
         0 : unknown
Blast index version [unknown]: 2

   EMBOSS An error in dbiblast.c at line 547:
failed to parse '
# 

Does anybody have ideas? what should I input for 'Wildcard databse filename' question?

Thank you very much.

Grace



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