dbiflat

[Claude Bonnard]

Hello,

I have a little problem /error during database formatting..
does someone have an idea?

This error has apparently no consequence since the program terminates with a
usable result, but I prefer things which goes "clean".

dbiflat -idformat=SWISS -directory=/db/swiss-prot/ -dbname=swissprot
-release=40 -date=17/12/02 -filenames=swiss.dat -i
ndexdirectory=/db/emboss/swissprot/40 -debug
Error: Bad database attribute ''

Index a flat file database

----------------------------------------

Here is the head of the dbiflat.dbg (probably not userful to have all the
entries..)

With my best regards,

Claude



Debug file dbiflat.dbg buffered:No
acdArgsScan acdDebug Yes acdDoHelp No
ajFileNewIn '/home/emboss/EMBOSS-2.5.0/share/EMBOSS/acd/dbiflat.acd'
ajNamResolve of '/home/emboss/EMBOSS-2.5.0/share/EMBOSS/acd/dbiflat.acd'
EOF ajFileGetsL file /home/emboss/EMBOSS-2.5.0/share/EMBOSS/acd/dbiflat.acd
closing file '/home/emboss/EMBOSS-2.5.0/share/EMBOSS/acd/dbiflat.acd'
acdSetDefC auto 'N' 256a0
acdSetDefC stdout 'N' 25740
acdSetDefC filter 'N' 257e0
acdSetDefC options 'N' 25880
acdSetDefC debug 'N' 25920
acdSetDefC acdlog 'N' 259c0
acdSetDefC acdpretty 'N' 25a60
acdSetDefC acdtable 'N' 25b00
acdSetDefC help 'N' 25ba0
acdSetDefC verbose 'N' 25c40
acdSetDefC warning 'Y' 25ce0
acdSetDefC error 'Y' 25d80
acdSetDefC fatal 'Y' 25e20
acdSetDefC die 'N' 25ec0
acdSetVarDef today '17/12/02' ff25fbc8
acdNewSec 'input' acdSecList length 0
acdNewSec acdSecList push 'input' new length 1
acdSet attr 'idformat' val 'required' type ''
acdSet attr 'idformat' val 'information' type ''
acdSet attr 'idformat' val 'values' type ''
acdSet attr 'idformat' val 'maximum' type ''
acdSet attr 'idformat' val 'minimum' type ''
acdSet attr 'idformat' val 'default' type ''
acdSet attr 'directory' val 'required' type ''
acdSet attr 'directory' val 'default' type ''
acdSet attr 'directory' val 'information' type ''
acdSet attr 'filenames' val 'required' type ''
acdSet attr 'filenames' val 'default' type ''
acdSet attr 'filenames' val 'information' type ''
acdNewEndsec 'input' acdSecList length 1
Pop from acdSecList 'input' (0) new length 0
acdNewSec 'required' acdSecList length 0
acdNewSec acdSecList push 'required' new length 1
acdSet attr 'dbname' val 'parameter' type ''
acdSet attr 'dbname' val 'maxlength' type ''
acdSet attr 'dbname' val 'minlength' type ''
acdSet attr 'dbname' val 'information' type ''
acdSet attr 'release' val 'required' type ''
acdSet attr 'release' val 'default' type ''
acdSet attr 'release' val 'maxlength' type ''
acdSet attr 'release' val 'information' type ''
acdSet attr 'date' val 'required' type ''
acdSet attr 'date' val 'default' type ''
acdSet attr 'date' val 'valid' type ''
acdSet attr 'date' val 'information' type ''
acdSet attr 'date' val 'pattern' type ''
acdNewEndsec 'required' acdSecList length 1
Pop from acdSecList 'required' (0) new length 0
acdNewSec 'advanced' acdSecList length 0
acdNewSec acdSecList push 'advanced' new length 1
acdSet attr 'fields' val 'required' type ''
acdSet attr 'fields' val 'information' type ''
acdSet attr 'fields' val 'values' type ''
acdSet attr 'fields' val 'minimum' type ''
acdSet attr 'fields' val 'maximum' type ''
acdSet attr 'fields' val 'default' type ''
acdSet attr 'exclude' val 'information' type ''
acdSet attr 'indexdirectory' val 'default' type ''
acdSet attr 'indexdirectory' val 'information' type ''
acdSet attr 'maxindex' val 'default' type ''
acdSet attr 'maxindex' val 'minimum' type ''
acdSet attr 'maxindex' val 'information' type ''
acdSet attr 'sortoptions' val 'default' type ''
acdSet attr 'sortoptions' val 'information' type ''
acdSet attr 'sortoptions' val 'help' type ''
acdSet attr 'systemsort' val 'default' type ''
acdSet attr 'systemsort' val 'information' type ''
acdSet attr 'cleanup' val 'default' type ''
acdSet attr 'cleanup' val 'information' type ''
acdNewEndsec 'advanced' acdSecList length 1
Pop from acdSecList 'advanced' (0) new length 0
-- All Done : acdSecList length 0
acdSet attr 'dbname' val 'required' type ''
qualifier value 'SWISS' 'idformat=SWISS' 9 .. -1
acdDef idformat 'SWISS' 26758
acdSetDef idformat 'SWISS' 26758
qualifier value '/db/swiss-prot' 'directory=/db/swiss-prot' 10 .. -1
acdDef directory '/db/swiss-prot' 267a0
acdSetDef directory '/db/swiss-prot' 267a0
qualifier value 'swissprot' 'dbname=swissprot' 7 .. -1
acdDef dbname 'swissprot' 26b40
acdSetDef dbname 'swissprot' 26b40
qualifier value '40' 'release=40' 8 .. -1
acdDef release '40' 2ff10
acdSetDef release '40' 2ff10
qualifier value '17/12/02' 'date=17/12/02' 5 .. -1
acdDef date '17/12/02' 2ffb0
acdSetDef date '17/12/02' 2ffb0
qualifier value 'swiss.dat' 'filenames=swiss.dat' 10 .. -1
acdDef filenames 'swiss.dat' 269f0
acdSetDef filenames 'swiss.dat' 269f0
qualifier value '/db/emboss/swissprot/40'
'indexdirectory=/db/emboss/swissprot/40' 15 .. -1
acdDef indexdirectory '/db/emboss/swissprot/40' 30378
acdSetDef indexdirectory '/db/emboss/swissprot/40' 30378
acdDef debug 'Y' 25920
acdSetDef debug 'Y' 25920
acdSetBool -auto def: N
acdSetQualAppl 'auto'
acdSetBool -auto val: No
acdSetBool -stdout def: N
acdSetQualAppl 'stdout'
acdSetBool -stdout val: No
acdSetBool -filter def: N
acdSetQualAppl 'filter'
acdSetBool -filter val: No
acdSetBool -options def: N
acdSetQualAppl 'options'
acdSetBool -options val: No
acdSetBool -debug def: Y
acdSetQualAppl 'debug'
acdSetBool -debug val: Yes
acdSetBool -acdlog def: N
acdSetQualAppl 'acdlog'
acdSetBool -acdlog val: No
acdSetBool -acdpretty def: N
acdSetQualAppl 'acdpretty'
acdSetBool -acdpretty val: No
acdSetBool -acdtable def: N
acdSetQualAppl 'acdtable'
acdSetBool -acdtable val: No
acdSetBool -help def: N
acdSetQualAppl 'help'
acdSetBool -help val: No
acdHelp No
acdSetBool -verbose def: N
acdSetQualAppl 'verbose'
acdSetBool -verbose val: No
acdSetBool -warning def: Y
acdSetQualAppl 'warning'
acdSetBool -warning val: Yes
acdSetBool -error def: Y
acdSetQualAppl 'error'
acdSetBool -error val: Yes
acdSetBool -fatal def: Y
acdSetQualAppl 'fatal'
acdSetBool -fatal val: Yes
acdSetBool -die def: N
acdSetQualAppl 'die'
acdSetBool -die val: No
testing 'SWISS'
Found 1 matches OK: Y min: 1 max: 1
Accept: 'SWISS'
Found 1 matches
Menu length now 0
before return val[0] 'SWISS'
before return val[0] 'SWISS'
Storing val[0] 'SWISS'
testing 'acnum'
Found 1 matches OK: Y min: 0 max: 5
Accept: 'acnum'
Found 1 matches
Menu length now 0
before return val[0] 'acnum'
before return val[0] 'acnum'
Storing val[0] 'acnum'
acdSetBool -systemsort def: Y
acdSetQualAppl 'systemsort'
acdSetBool -systemsort val: Yes
acdSetBool -cleanup def: Y
acdSetQualAppl 'cleanup'
acdSetBool -cleanup val: Yes
reading '/db/swiss-prot/swiss.dat'
writing '/db/emboss/swissprot/40/'
embDbiFileListExc dir '/db/swiss-prot' wildfile 'swiss.dat' exclude ''
dirfix '/db/swiss-prot/'
ajFileTestSkip: file '.' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC '.' 'swiss.dat' cmp: -1
ajFileTestSkip: file '..' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC '..' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'swissprot_36' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'swissprot_36' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'README' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'README' 'swiss.dat' cmp: -1
ajFileTestSkip: file '7tmrlist.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC '7tmrlist.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'aatrnasy.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'aatrnasy.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'acindex.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'acindex.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'allergen.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'allergen.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'autindex.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'autindex.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'calbican.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'calbican.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'cdlist.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'cdlist.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'celegans.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'celegans.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'citindex.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'citindex.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'dicty.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'dicty.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'ec2dtosp.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'ec2dtosp.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'ecoli.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'ecoli.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'embltosp.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'embltosp.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'experts.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'experts.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'extradom.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'extradom.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'glycosid.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'glycosid.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'haeinflu.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'haeinflu.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'hoxlist.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'hoxlist.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'humchr20.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'humchr20.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'release' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'release' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'humchr21.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'humchr21.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'humchr22.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'humchr22.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'humchrx.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'humchrx.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'humchry.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'humchry.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'jourlist.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'jourlist.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'keyindex.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'keyindex.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'keywlist.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'keywlist.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'mimtosp.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'mimtosp.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'nomlist.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'nomlist.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'pdbtosp.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'pdbtosp.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'peptidas.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'peptidas.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'plastid.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'plastid.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'pombe.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'pombe.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'relnotes.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'relnotes.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'restric.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'restric.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'ribosomp.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'ribosomp.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'salty.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'salty.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'shortdes.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'shortdes.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'speclist.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'speclist.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'speindex.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'speindex.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'new' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'new' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'submit.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'submit.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'subtilis.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'subtilis.txt' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'tisslist.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'tisslist.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'userman.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'userman.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'yeast.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'yeast.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'yeast1.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'yeast1.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'yeast10.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'yeast10.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'yeast11.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'yeast11.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'yeast14.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'yeast14.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'yeast2.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'yeast2.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'yeast3.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'yeast3.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'yeast5.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'yeast5.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'yeast6.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'yeast6.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'yeast7.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'yeast7.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'yeast8.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'yeast8.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'yeast9.txt' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'yeast9.txt' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'swiss_2.idx' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'swiss_2.idx' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'swiss.seq' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'swiss.seq' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'swiss.stamp' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'swiss.stamp' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'trembl.dat' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl.dat' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'trembl.idx' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl.idx' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'trembl.seq' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl.seq' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'trembl_new.dat' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl_new.dat' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'trembl_new.idx' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl_new.idx' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'trembl_new.seq' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl_new.seq' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'swiss.idx' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'swiss.idx' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'pdb.seq' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'pdb.seq' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'trembl_2.idx' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl_2.idx' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'trembl.stamp' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl.stamp' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'pir.seq.Z' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'pir.seq.Z' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'nr_filter' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'nr_filter' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'trembl_new_2.idx' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl_new_2.idx' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'gp_eliot_filter' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'gp_eliot_filter' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'trembl_varsplic.seq' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl_varsplic.seq' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'swiss_new.dat' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'swiss_new.dat' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'swiss.cix' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'swiss.cix' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'trembl.cix' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl.cix' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'trembl_new.cix' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl_new.cix' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'new_seq.dat' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'new_seq.dat' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'trembl_new.stamp' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl_new.stamp' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'README.mirror' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'README.mirror' 'swiss.dat' cmp: -1
ajFileTestSkip: file 'swiss.dat' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'swiss.dat' 'swiss.dat' cmp: 0
ajFileTestSkip: file 'swiss.dat' included by 'swiss.dat'
accept 'swiss.dat'
ajFileTestSkip: file 'swiss_varsplic.seq' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'swiss_varsplic.seq' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'swiss_varsplic.cix' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'swiss_varsplic.cix' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'trembl_varsplic.cix' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'trembl_varsplic.cix' 'swiss.dat' cmp: 1
ajFileTestSkip: file 'sprot40.dat' exclude: '' include: 'swiss.dat'
ajStrMatchWildCC 'sprot40.dat' 'swiss.dat' cmp: -1
1 files for '/db/swiss-prot' 'swiss.dat'
ajFileNewIn '/db/swiss-prot/swiss.dat'
ajNamResolve of '/db/swiss-prot/swiss.dat'
processing filename '/db/swiss-prot/swiss.dat' ...
processing file '/db/swiss-prot/swiss.dat' ...
++id '104K_THEPA'
++acc 'P15711'
++id '108_LYCES'
++acc 'Q43495'
++id '10KD_VIGUN'
++acc 'P18646'
++id '110K_PLAKN'
++acc 'P13813'
++id '11S3_HELAN'
++acc 'P19084'
......................

-- 
Claude Bonnard Ph.D.
ISREC (Swiss Institute for Experimental Cancer Research)
Bioinformatics Group
Ch des Boveresses 155
CH-1066 Epalinges
Switzerland
phone: [41-21]-692-5891
  fax: [41-21]-652-6933