DBIBLAST error when creating blast database
Peter Rice
peter.rice at uk.lionbioscience.com
Mon Dec 2 15:41:42 UTC 2002
Marcus Claesson wrote:
> Not fully, but at least I don't get any error messages. The ecoli.aa db
> won't show up when I run 'showdb'.
You need to add the database to your site-wide emboss.defaults file (or
your own ~/.embossrc file).
We had a suggestion last week to generate the emboss.defaults lines in
dbiblast - that will help you, but I don't expect to have time until the
New Year.
The database definition will look like this:
DB ecoliaa [
type: P format: ncbi method: blast
dir: /user/claesson/data
indexdir: /user/classon/data
comment: "E.coli protein data"
]
--
------------------------------------------------
Peter Rice, LION Bioscience Ltd, Cambridge, UK
peter.rice at uk.lionbioscience.com +44 1223 224723
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