DBIBLAST error when creating blast database
Marcus Claesson
marcus at chah.ucc.ie
Mon Dec 2 14:42:56 UTC 2002
Hello,
When I try to create a blast database for use within emboss (I have
EMBOSS-2.5.1), it won't work. I created the ecoli.aa db using 'formatdb'.
This is what I'm doing:
.............
[marcus at nsfm39 db]$ ls -l ecoli.aa*
-rw-rw-r-- 1 marcus marcus 563415 Nov 11 17:08 ecoli.aa.phr
-rw-rw-r-- 1 marcus marcus 34376 Nov 11 17:08 ecoli.aa.pin
-rw-rw-r-- 1 marcus marcus 34312 Nov 11 17:08 ecoli.aa.pnd
-rw-rw-r-- 1 marcus marcus 180 Nov 11 17:08 ecoli.aa.pni
-rw-rw-r-- 1 marcus marcus 354726 Nov 11 17:08 ecoli.aa.psd
-rw-rw-r-- 1 marcus marcus 8287 Nov 11 17:08 ecoli.aa.psi
-rw-rw-r-- 1 marcus marcus 1363280 Nov 11 17:08 ecoli.aa.psq
[marcus at nsfm39 db]$ dbiblast
Index a BLAST database
Database name: ecoli.aa
Database directory [.]:
Wildcard database filename [ecoli.aa]:
Release number [0.0]:
Index date [00/00/00]:
N : nucleic
P : protein
? : unknown
Sequence type [unknown]: P
1 : wublast and setdb/pressdb
2 : formatdb
0 : unknown
Blast index version [unknown]: 2
EMBOSS An error in dbiblast.c at line 351:
No files selected
........................
Could anyone help me with this?
Thanx in advance!
Marcus
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