seqret doesn't count more than 99?

Peter Rice peter.rice at uk.lionbioscience.com
Mon Apr 29 10:41:30 UTC 2002


"simon andrews (BI)" wrote:
> The problem seems to be in the accession numbers entered into the .trg file
> created by dbiblast.  Running seqret with debug on, shows the following
> (edited) entries:

The command line:

   seqret fugu_blasttest:Scaffold_1

searches both the entryname and acnum indices.

The ZZ accession number are invented bu dbiblast so there is something in
the acnum index (they should disappear in 2.4.0, where we handle empty
indices gracefully).

The problem will be in the entryname index, where is seems Scaffold_1 was
found, but not accepted. I am waiting for the example file from Charles,
but I suspect this is a problem already fixed in the code for 2.4.0.

regards,

Peter

-- 
------------------------------------------------
Peter Rice, LION Bioscience Ltd, Cambridge, UK
peter.rice at uk.lionbioscience.com +44 1223 224723




More information about the EMBOSS mailing list