getorf

[Michael Behnke]

  I have been using the getorf program recently to find ORF's in
Cryptosporidium contigs with great results.  I do have a question though.
Does anyone know what are the STOP and START codons used by the program,
and do they change depending upon the table one uses?  I see that plotorf
uses Stop codons = TAA,TAG,TGA and Start codon = ATG, are these the same
for getorf?

Thanks
Mike Behnke
Bioinformatics Tech
White Lab
Montana State University