use of full genbank style ids
Steve Roels
roels at mpi.com
Thu Dec 14 21:16:09 UTC 2000
Hello,
Anyone know if there is a way to force the use of full genbank-style sequence identifiers
in output files?
for example:
>gi|12345|gb|AC00123.4|HUDDR
GGCGCGCCG...
The id used is either "gi" (if fasta format is specified - or no format is specified) or
"gb|AC00123.4|HUDDR" (if ncbi format is specified).
In short (and to be more general), what I want is to have everything up to the first
white-space (i.e. including vertical bars,colons,etc) to be treated as the id.
Thanks,
-Steve
--
*****************************************************************
Steve Roels, Ph.D.
Scientist - Computational Biology Phone: (617) 761-6820
Millennium Pharmaceuticals, Inc. FAX: (617) 577-3568
640 Memorial Drive Email: roels at mpi.com
Cambridge, MA 02139-4815
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