Writing The Matrix

Peter Rice pmr at ebi.ac.uk
Fri Jan 16 17:33:52 UTC 2004

Damian Counsell wrote:
> EMBOSSnians!
> Would it be possible to have some functions in AJAX to write scoring
> matrices as well as to read them
>   ajMatrixRead   --> ajMatrixWrite
>   ajMatrixfRead  --> ajMatrixfWrite
> ?  I am going to be generating a *lot* of pair potential-based scoring
> matrices.

Will do. It will need a new ACD output type (better than a simple 
outfile as then we can play with formats).

I need to do something similar for Phylip 3.6 output files. I will add 
them at the same time.

Would anyone like nexus matrix output format?


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